omero package¶
Subpackages¶
- omero.api package
- omero.gateway package
- omero.grid package
- omero.install package
- Submodules
- Module contents
- omero.model package
- omero.plugins package
- Submodules
- omero.plugins.admin module
- omero.plugins.basics module
- omero.plugins.chgrp module
- omero.plugins.chown module
- omero.plugins.db module
- omero.plugins.delete module
- omero.plugins.download module
- omero.plugins.export module
- omero.plugins.fs module
- omero.plugins.group module
- omero.plugins.hql module
- omero.plugins.import module
- omero.plugins.ldap module
- omero.plugins.node module
- omero.plugins.obj module
- omero.plugins.perf module
- omero.plugins.prefs module
- omero.plugins.script module
- omero.plugins.search module
- omero.plugins.sessions module
- omero.plugins.submit module
- omero.plugins.tag module
- omero.plugins.user module
- Module contents
- Submodules
- omero.romio package
- omero.testlib package
- Submodules
- Module contents
AbstractRepoTestAbstractRepoTest.all()AbstractRepoTest.assert_dir_write()AbstractRepoTest.assert_error()AbstractRepoTest.assert_import()AbstractRepoTest.assert_listings()AbstractRepoTest.assert_no_dir_write()AbstractRepoTest.assert_no_read()AbstractRepoTest.assert_no_write()AbstractRepoTest.assert_passes()AbstractRepoTest.assert_read()AbstractRepoTest.assert_write()AbstractRepoTest.create_file()AbstractRepoTest.create_fileset()AbstractRepoTest.create_managed_dir()AbstractRepoTest.create_settings()AbstractRepoTest.create_test_dir()AbstractRepoTest.full_import()AbstractRepoTest.get_managed_repo()AbstractRepoTest.raw()AbstractRepoTest.setup_method()AbstractRepoTest.upload_folder()AbstractRepoTest.user_dir()
ClientsITestITest.DEFAULT_GROUP_OWNERITest.DEFAULT_PERMSITest.DEFAULT_PRIVILEGESITest.DEFAULT_SYSTEMITest.add_experimenters()ITest.add_groups()ITest.calculate_sha1()ITest.change_group()ITest.change_permissions()ITest.create_datasets()ITest.create_pixels()ITest.create_test_image()ITest.delete()ITest.do_submit()ITest.get_fileset()ITest.get_pixels_type()ITest.group_and_name()ITest.import_fake_file()ITest.import_image()ITest.import_plates()ITest.import_pyramid()ITest.index()ITest.keep_root_alive()ITest.link()ITest.logITest.login_args()ITest.login_attempt()ITest.make_dataset()ITest.make_file_annotation()ITest.make_image()ITest.make_project()ITest.make_tag()ITest.missing_pyramid()ITest.new_client()ITest.new_client_and_user()ITest.new_dataset()ITest.new_group()ITest.new_image()ITest.new_object()ITest.new_project()ITest.new_tag()ITest.new_user()ITest.omerodistdir()ITest.remove_experimenters()ITest.root_login_args()ITest.set_context()ITest.setup_class()ITest.skip_if()ITest.teardown_class()ITest.timeit()ITest.tmpfile()ITest.user_and_name()ITest.uuid()ITest.wait_for_pyramid()ITest.wait_on_cmd()ITest.write()
PFProjectionFixture
- omero.util package
- Submodules
- omero.util.OmeroPopo module
- omero.util.ROIDrawingUtils module
- omero.util.ROI_utils module
- omero.util.cleanse module
- omero.util.concurrency module
- omero.util.decorators module
- omero.util.figureUtil module
- omero.util.imageUtil module
- omero.util.image_utils module
- omero.util.import_candidates module
- omero.util.importperf module
- omero.util.metadata_mapannotations module
- omero.util.metadata_utils module
- omero.util.pixelstypetopython module
- omero.util.populate_metadata module
BulkToMapAnnotationContextDatasetWrapperDeleteMapAnnotationContextHeaderResolverImageDataMetadataErrorPDIWrapperParsingContextPlateDataPlateWrapperProjectWrapperSPWWrapperScreenWrapperSkipValueResolverValueWrapperWellDataWellSampleDataget_config()parse_column_types()parse_target_object()usage()
- omero.util.populate_roi module
AbstractMeasurementCtxAbstractPlateAnalysisCtxDownloadingOriginalFileProviderFlexMeasurementCtxFlexPlateAnalysisCtxInCellMeasurementCtxInCellPlateAnalysisCtxMIASMeasurementCtxMIASPlateAnalysisCtxMeasurementErrorMeasurementParsingResultPlateAnalysisCtxFactoryThreadPoolWorkerget_thread_pool()usage()
- omero.util.pydict_text_io module
- omero.util.roi_handling_utils module
- omero.util.script_utils module
- omero.util.sessions module
- omero.util.temp_files module
- omero.util.text module
- omero.util.tiles module
- omero.util.upgrade_check module
- Module contents
DependencyEnvironmentResourcesServantServerServerContextSimpleServantStreamRedirectadd_grid_object()configure_logging()configure_server_logging()create_admin_session()edit_path()get_omero_user_cache_dir()get_omero_userdir()get_user()get_user_dir()internal_service_factory()load_dotted_class()long_to_path()make_logname()tail_lines()
- Submodules
Submodules¶
- omero.all module
- omero.callbacks module
CmdCallbackICmdCallbackI.block()CmdCallbackI.close()CmdCallbackI.finished()CmdCallbackI.getResponse()CmdCallbackI.getStatus()CmdCallbackI.getStatusOrThrow()CmdCallbackI.initialPoll()CmdCallbackI.isCancelled()CmdCallbackI.isFailure()CmdCallbackI.loop()CmdCallbackI.onFinished()CmdCallbackI.poll()CmdCallbackI.step()
ProcessCallbackIadapter_and_category()
- omero.cli module
BaseControlCLICLI.PluginsLoadedCLI.assertRC()CLI.call()CLI.close()CLI.completedefault()CLI.completenames()CLI.configure_plugins()CLI.conn()CLI.die()CLI.execute()CLI.exit()CLI.get_client()CLI.get_config_property_lines()CLI.get_event_context()CLI.initData()CLI.invoke()CLI.invokeloop()CLI.loadpath()CLI.loadplugins()CLI.onecmd()CLI.parsePropertyFile()CLI.popen()CLI.postcmd()CLI.postloop()CLI.readDefaults()CLI.register()CLI.register_only()CLI.rvCLI.set_client()CLI.set_event_context()CLI.waitForPlugins()
CmdControlContextDiagnosticsControlDirectoryTypeErrorExceptionHandlerExistingFileExperimenterArgExperimenterGroupArgGraphArgGraphControlHelpFormatterNewFileTypeNonZeroReturnCodeParserProxyStringTypeServiceManagerMixinUserGroupControlUserGroupControl.add_group_arguments()UserGroupControl.add_id_name_arguments()UserGroupControl.add_single_group_argument()UserGroupControl.add_single_user_argument()UserGroupControl.add_user_and_group_arguments()UserGroupControl.add_user_arguments()UserGroupControl.addownersbyid()UserGroupControl.addusersbyid()UserGroupControl.error_ambiguous_group()UserGroupControl.error_ambiguous_user()UserGroupControl.error_invalid_group()UserGroupControl.error_invalid_groupid()UserGroupControl.error_invalid_user()UserGroupControl.error_invalid_userid()UserGroupControl.error_no_group_found()UserGroupControl.error_no_input_group()UserGroupControl.error_no_input_user()UserGroupControl.error_no_user_found()UserGroupControl.find_group()UserGroupControl.find_group_by_id()UserGroupControl.find_group_by_name()UserGroupControl.find_user()UserGroupControl.find_user_by_id()UserGroupControl.find_user_by_name()UserGroupControl.get_single_user_group()UserGroupControl.get_users_groups()UserGroupControl.getmemberids()UserGroupControl.getownerids()UserGroupControl.getuserids()UserGroupControl.list_groups()UserGroupControl.list_users()UserGroupControl.output_groups_list()UserGroupControl.output_users_list()UserGroupControl.removeownersbyid()UserGroupControl.removeusersbyid()UserGroupControl.set_users_default_group_by_user_id()
WriteOnceNamespaceadmin_only()argv()cli_login()
- omero.clients module
BaseClientBaseClient.CallbackIBaseClient.closeSession()BaseClient.createClient()BaseClient.createSession()BaseClient.destroySession()BaseClient.download()BaseClient.enableKeepAlive()BaseClient.getAdapter()BaseClient.getCategory()BaseClient.getCommunicator()BaseClient.getContext()BaseClient.getDefaultBlockSize()BaseClient.getImplicitContext()BaseClient.getInput()BaseClient.getInputKeys()BaseClient.getInputs()BaseClient.getManagedRepository()BaseClient.getOutput()BaseClient.getOutputKeys()BaseClient.getOutputs()BaseClient.getProperties()BaseClient.getProperty()BaseClient.getPropertyMap()BaseClient.getRouter()BaseClient.getSession()BaseClient.getSessionId()BaseClient.getStatefulServices()BaseClient.isSecure()BaseClient.joinSession()BaseClient.killSession()BaseClient.onHeartbeat()BaseClient.onSessionClosed()BaseClient.onShutdownIn()BaseClient.parseAndSetInt()BaseClient.setAgent()BaseClient.setIP()BaseClient.setInput()BaseClient.setOutput()BaseClient.sha1()BaseClient.startKeepAlive()BaseClient.stopKeepAlive()BaseClient.submit()BaseClient.upload()BaseClient.waitOnCmd()BaseClient.write_stream()
- omero.columns module
- omero.config module
- omero.conversions module
- omero.hdfstorageV2 module
- omero.java module
- omero.main module
- omero.min module
- omero.processor module
MATLABProcessIProcessIProcessI.PopenProcessI.activate()ProcessI.allcallbacks()ProcessI.alreadyDone()ProcessI.callback_castProcessI.callbacksProcessI.cleanup_output()ProcessI.cleanup_tmpdir()ProcessI.command()ProcessI.deactivate()ProcessI.final_statusProcessI.interpreterProcessI.isActive()ProcessI.isFinished()ProcessI.isRunning()ProcessI.iskillProcessI.make_config()ProcessI.make_env()ProcessI.make_files()ProcessI.omero_homeProcessI.paramsProcessI.pidProcessI.popenProcessI.propertiesProcessI.rcodeProcessI.set_job_status()ProcessI.startedProcessI.status()ProcessI.stoppedProcessI.tmp_client()ProcessI.upload_output()ProcessI.uuidProcessI.wasActivated()
ProcessorIProcessorI.accepts_listProcessorI.categoryProcessorI.find_launcher()ProcessorI.internal_session()ProcessorI.lookup()ProcessorI.parseJob()ProcessorI.process()ProcessorI.processJob()ProcessorI.register_session()ProcessorI.requestRunning()ProcessorI.setProxy()ProcessorI.use_sessionProcessorI.user_client()ProcessorI.willAccept()
UseSessionHolderWithGroupusermode_processor()with_context()
- omero.rtypes module
- omero.scripts module
BoolColorDoubleFloatIntListLongMapMissingInputsObjectParseExitPlanePointSetStringTypecheck_boundaries()check_values()client()compare_proto()error_msg()expand()group_params()handleParse()parse_file()parse_input()parse_inputs()parse_text()set_input()validate_inputs()wait()
- omero.tables module